Relevant Publications

From IMAG_Wiki

• Lung High-Performance CFD & FSI Computing and Modeling

Lin, C.-L.

1. Choi, J., G. Xia, M.H. Tawhai, E.A. Hoffman, and C.-L. Lin, “Numerical study of high frequency oscillatory air flow and convective mixing in a CT-based human airway model,” DOI: 10.1007/s10439-010-0110-7, Annals of Biomedical Engineering, 2010.

2. Yin, Y., J. Choi, E.A. Hoffman, M.H. Tawhai, and C.-L. Lin, “Simulation of pulmonary air flow with a subject-specific boundary condition,” doi:10.1016/j.jbiomech.2010.03.048, available online, Journal of Biomechanics, 2010.

3. Xia, G., M. H. Tawhai, E. A. Hoffman, and C.-L. Lin, “Airway Wall Stiffness and Peak Wall Shear Stress: A Fluid-Structure Interaction Study in Rigid and Compliant Airways,” Annals of Biomedical Engineering, 38(5), 1836-1853, 2010.

More... http://www.engineering.uiowa.edu/~ching/Publications_BEPH.pdf

• The Physiome: A Mission Imperative

http://biomedicalcomputationreview.org/6/3/6.pdf

• Multiscale Modeling in Drug Discovery and Development: Future Opportunities and Present Challenges.

Vicini P

Clin Pharmacol Ther. 2010 Jun 2

http://www.ncbi.nlm.nih.gov/pubmed/20520608

• VPH Papers

• (January 2010) The epistemology of mathematical and statistical modeling: a quiet methodological revolution.

Rodgers, JL

American Psychologist. Vol 65(1), 1-12

http://psycnet.apa.org/index.cfm?fa=search.displayRecord&uid=2009-24989-001

• (August 2008) A Brief History of the Hypothesis.

Glass D, Hall N

Cell Volume 134, Issue 3: 378-381 Pubmed link

• (April 2007) Error estimation improves multiscale models

http://ascr-discovery.science.doe.gov/universities/oden1.shtml

• (March 2007) Beyond standardization: dynamic software infrastructures for systems biology

Morris A. Swertz and Ritsert C. Jansen

Nature Reviews Genetics, Volume 8, Number 3, pages 235-243, http://www.nature.com/nrg/journal/v8/n3/index.html

ABSTRACT - Progress in systems biology is seriously hindered by slow production of suitable software infrastructures. Biologists need infrastructure that easily connects to work that is done in other laboratories, for which standardization is helpful. However, the infrastructure must also accommodate the specifics of their biological system, but appropriate mechanisms to support variation are currently lacking. We argue that a minimal computer language, and a software tool called a generator, can be used to quickly produce customized software infrastructures that 'systems biologists really want to have'.

• (February 2007) Mathematical models add more options for life sciences, cancer researchers

The use of mathematical modeling to better understand the origin and progression of life systems is the subject of American Scientist cover article Multiscale Modeling in Biology featuring the work in mathematical biology of Santiago Schnell and Philip K Maini. A related paper authored by Schnell is ranked first among the Theoretical Biology & Medical Modelling most viewed articles of all time. This is a list of the most frequently accessed articles in the history of the journal, compiled using online access statistics of the publisher BioMedCentral. The article A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies was coauthored with Benjamin Ribba and Thierry Colin, and appeared in Theoretical Biology and Medical Modelling 3:7 (2006). More...