Listing of MSM Participants

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[edit] Multiscale Modeling Group (MSM) List of Participants

Name Project Email
Geoffrey AbbottPredictive msm of atrial fibrillation for therapy developmentGWA2001@MED.CORNELL.EDU
Kurt AndersonFramework for the Adaptive Multiscale Modelling of Biopolymers anderk5@rpi.edu
Victor Barocas Multiscale Mechanics of Bioengineered Tissues baroc001@umn.edu
James Bassingthwaighte Sortware Integration between JSim and Systems Biology Workbench, Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology http://nsr.bioeng.washington.edu jbb@bioeng.washington.edu
Daniel BeardMulti-Scale Modeling of the Heart in Metabolic Syndrome and Cardiovascular Disease, Mechanisms of Metabolic Dysfunction in Heart Diseasedbeard@mcw.edu
Scott BerceliMultiscale Network Modeling of Hemodynamically-Driven Vascular Adaptation bercesa@surgery.ufl.edu
Jeff Bischoff Research Interests: Multiscale Joint Biomechanics jeff.bischoff@zimmer.com
James BowerBOWER@uthscsa.edu
Nicola Lai, Gerald Saidel (in place of Marco Cabrera)Time Course of Metabolic Adaptations During Loading and Unloading nicola.lai@case.edu
David CaiCollaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ cai@cims.nyu.edu
William Cannon Hierarchical, Multi-Objective Optimization of Microbial Community Proteomic Systems william.cannon@pnl.gov
Howard Chizeck Adaptive Multi-Scale Model Simulation, Reduction and Integration for Cardiac Muscle Physiology http://nsr.bioeng.washington.edu chizeck@u.washington.edu
Yoonsuck Choe Multi-Scale Imaging, Analysis, and Integration of Brain Networks choe@tamu.edu
Sharon CrookNeuroML Standards and Tools for Multiscale Model Specification and ExchangeSharon.Crook@asu.edu
David ChristiniPredictive msm of atrial fibrillation for therapy developmentdchristi@med.cornell.edu
David D'Argenio Biomedical Simulations Resource: Core Project #1 - Pharmacokinetic/Pharmacodynamic Systems Analysis dargenio@bmsr.usc.edu
Suvranu DeA Self-Consistent Multiscale Method for Modeling the Effects of Neutron Irradiation on the Mechanical Properties of BCC and FCC Metals; Nonlinear multiscale modeling of 3D woven fiber composites under ballistic loading; Development of a Self-Consistent Multiscale Method for Coupled Nonlinear Micro Macro Analysis of Heterogeneous Explosives; http://acor.rpi.edu/, http://www.springer.com/engineering/biomedical+eng/book/978-90-481-3574-5des@rpi.edu
Thomas Deisboeck Center for the Development of a Virtual Tumor, CViT https://www.cvit.org deisboec@helix.mgh.harvard.edu
Thomas DiacovoModel of Platelet Adhesion and Thrombus Formationtd2142@columbia.edu
David EckmannTargeted Microcarrier Design and OptimizationDavid.Eckmann@uphs.upenn.edu
Mounya ElhilaliOvercoming the cocktail party problem: a multi-scale perspective on the neurobiology of auditory scene analysismounya@jhu.edu
Ahmet Erdemir Efficient methods for multi-domain biomechanical simulations, Predicting Cell Deformation from Body Level Mechanical Loads erdemira@ccf.org
Daniel Einstein 3D Imaging & Computer Model of the Respiratory Tract daniel.einstein@pnl.gov
James Glazierglazier@indiana.edu
Mark Gordon, Jeremy Smith, and Xiaolin ChengMultiscale Mathematics and Simulations of Complex Biological Systemssmithjc@ornl.gov, gordon@ameslab.gov, mark@si.msg.chem.iastate.edu, chengx@ornl.gov
Trent GuessDynamic Simulation of Joints Using Multi-Scale Modeling guesstr@umkc.edu
Randy Heiland CompuCell3D heiland@indiana.edu
Anthony HuntMedia:Research_Description_for_MSM04May10.pdfa.hunt@ucsf.edu
Peter HunterInternational Union of Physiological Sciences Council Member p.hunter@auckland.ac.nz
Roger Kamm Multi-Scale Analysis of Cellular Force Transmission and Biochemical Activation rdkamm@mit.edu
George KarniadakisA Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena gk@cfm.brown.edu
Daniel Katzhttps://www.teragrid.org/dsk@ci.uchicago.edu
Roy KerckhoffsThe role of transmural gradients of excitation-contraction coupling in the ventricularly paced normal and failing heart roy@bioeng.ucsd.edu
Michael KingModel of Platelet Adhesion and Thrombus Formationmike.king@cornell.edu
Denise KirschnerA multi-scale approach for understanding antigen presentation in immunity; A multi-scale and multi-system approach to understanding granuloma formation in TB kirschne@umich.edu
Gregor Kovacic Collaborative Research: Cortical Processing across Multiple Time- and Space-Scales http://www.cims.nyu.edu/~yisun/publication.html http://www.rpi.edu/~kovacg/ kovacg@rpi.edu
Joy KuPhysics-based simulation of Biological Structures https://simtk.org/xml/index.xml joyku@stanford.edu
Rob Kunz Multi-Scale Human Respiratory System Simulations to Study the Health Effects of Aging, Disease and Inhaled Substances rfk102@only.arl.psu.edu
Tony Ladd Multi-Scale Modeling of Chemical-to-Mechanical Energy Conversion in Actin-Based Motility ladd@che.ufl.edu
Ching-Long Lin Multiscale Simulation of Gas Flow Distribution in the Human Lung ching-long-lin@uiowa.edu
Jennifer LindermanA multi-scale approach for understanding antigen presentation in immunity; A multi-scale and multi-system approach to understanding granuloma formation in TB linderma@umich.edu
Ernst Georg LuebeckScales of arcinogenesis: Cells, Crypts and Cancer gluebeck@fhcrc.org
Bill LyttonExtension of NEURON simulator for simulation of reaction-diffusion in neurons bill@neurosim.downstate.edu
Carlo MaleyScales of arcinogenesis: Cells, Crypts and Cancer cmaley@wistar.org
Andrew McCulloch Multi-Scale Modeling of the Mouse Heart: From Genotype to Phenotype http://cmrg.ucsd.edu, Multi-Scale Modeling of the Failing Heart for Cardiac Rysynchronization Therapy amcculloch@ucsd.edu
Jill McNitt-Graymcnitt@usc.edu
Michael Meyer-HermannMathematical Modelling of the Migration in Germinal Centres m.meyer-hermann@fias.uni-frankfurt.de
James MooreLymphatic Fluid Flow Modeling with Active Network Componentsjmoorejr@bme.tamu.edu
Peter OrtolevaIntercellular Genomics of Subsurface Microbial Colonies ortoleva@indiana.edu
Abani Patraabani@buffalo.edu
Alexander PopelPredictive experiment-based multiscale models of angiogenesis in breast cancerapopel@jhu.edu
Peter RichardsonA Stochastic Molecular Dynamics Method for Multiscale Modeling of Blood Platelet Phenomena Peter_Richardson@brown.edu
Terence SangerHigh speed simulation of developmental motor disorderstsanger@usc.edu
Michael SaundersNumerical Optimization Algorithms and Software for Systems Biologysaunders@stanford.edu
Jay SchieberCISE: Multiscale Modeling to Develop a Cyberinfrastructure for the Dynamics of Flexible and Stiff Entangled Macromolecules http://polyhub.org/bin/view schieber@iit.edu
Jeanette SchmidtPhysics-based simulation of Biological Structures https://simtk.org/xml/index.xml jeanette.schmidt@stanford.edu
Bill Schultzschultz@umich.edu
Yohannes ShiferawMSM of calcium mediated triggered activity in the heartyohannes.shiferaw@csun.edu
Maciej SwatMultiscale Studies of Segmentation in Vertebrate Embryos mswat@indiana.edu
Michela TauferDAPLDS: A Dynamically Adaptive Protein-Ligand Docking System Based on Multi-Scale Modeling taufer@acm.org
Merryn TawhaiAirway hyperresponsiveness: from molecule to organ m.tawhai@auckland.ac.nz
Paolo ViciniResearch Interests: Pharmacokinetics, pharmacodynamics, biotherapeutics, translational research, model identification and parameter estimation paolo.vicini@pfizer.com
Ron White Ronald.White@sdsmt.edu
Bridget WilsonMapping and Modeling ErbB Receptor Membrane Topography bwilson@salud.unm.edu